Your ClustalW Results
Your ClustalW Results:
Program: ClustalW
|
Title: -NONE- |
Alignment: -align |
OutputFormat: aln
| OutOrder: aligned |
ktup: 1 |
| Window: 0 |
Score: percent |
TopDiag: |
PairGap: 0.05 |
Matrix: blosum |
GapOpen: 10 |
| EndGaps: 10 |
GapExt: 0.05 |
GapDist: 0.05 |
Use JalView:
Pairwise Scores:
Job <665065> is submitted to queue .
CLUSTAL W (1.74) Multiple Sequence Alignments
Sequence format is PIR
Sequence 1: genoma 1532 bp
Sequence 2: cDNA 816 bp
Start of Pairwise alignments
Aligning...
Sequences (1:2) Aligned. Score: 98
Guide tree file created: [/net/nfs0/vol1/production/webadmin/tmp/19890927288155.dnd]
Start of Multiple Alignment
There are 1 groups
Aligning...
Group 1: Sequences: 2 Score:15232
Alignment Score 6296
CLUSTAL-Alignment file created [/net/nfs0/vol1/production/webadmin/tmp/19890927288155.aln]
Your guide tree:
19890927288155.dnd
(genoma:0.01716,cDNA:0.01716);
Your Multiple Sequence Alignment:
19890927288155.aln
CLUSTAL W (1.74) multiple sequence alignment
genoma GCCCTGAGGCAGCTCCATGGGGTAACTGAGGAAAAAACGAGGAAAACAGAGACGTCAATC 60
cDNA ------------------------------------------------------------
genoma CTTATCTGGAGTCCATTAATGAGGAGAACATTAGTCAGCTGTGAAAGCTAAGATGGGGTG 120
cDNA ------------------------------------------------------------
genoma ATAGGCCTTCGGGTGGGCAGGAGCAGGGGTGGGGGCAAGGCCGCCATGGGGGAGCACAGG 180
cDNA ------------------------------------------------------------
genoma GTTGGCAGGAACGCCTCCTCCACCCCACGTGCCCAGGTCTACGATAGGAAGGCCCTATAA 240
cDNA ------------------------------------------------------------
genoma GTGCCCACAGTCTAGCCTCTCCGGAGGCCCAGAGGAAGAGAGAAGAGAAAGAGAGAGGGA 300
cDNA ------------------------------------------------------------
genoma GGGAGGAAGAGCCACCCCCGTGGCCCAGACCACTGGCCAGCGCTCAGAAGGCCGAGCAGC 360
cDNA ------------------------------------------------------------
genoma ATGTGGGAACTCCGGTCCATAGCGTTCTCCCGAGCGGTGCTGGCCGAGTTCCTGGCCACG 420
cDNA ATGTGGGAACTCCGGTCCATAGCGTATTGCCGAGCGGTGCTGGCCGAGTTCCTGGCCACG 60
************************* * *******************************
genoma CTCCTTTTCGTCTTCTTTGGCCTTGGCTCAGCCCTCCAGTGGGCCAGCTCCCCACCCTCT 480
cDNA CTCCTTTTCGTCTTCTTTGGCCTTGGTTCAGCCCTCCAGTGGGCCAGCTCCCCACCCTCT 120
************************** *********************************
genoma GTGCTCCAGATTGCCGTGGCCTTTGGTCTGGGCATTGGCACCCTGGTTCAGGCTCTGGGC 540
cDNA GTGCTCCAGATTGCCGTGGCATTTGGTCTGGGCATTGGCACCCTGGTTCAGGCTCTGGGC 180
******************** ***************************************
genoma CATGTCAGCGGGGCCCACATCAACCCTGCTGTGACTGTGGCGTGCCTGGTGGGTTGCCAT 600
cDNA CATGTCAGCGGGGCCCACATCAACCCTGCTGTGACTGTGGCGTGCCTGGTGGGGTGCCAT 240
***************************************************** ******
genoma GTCTCCTTCCTTCGAGCTGCCTTCTACGTGGCTGCCCAGCTGCTGGGGGCCGTGGCCGGG 660
cDNA GTCTCCTTCCTTCGAGCTGCCTTCTACGTGGCTGCCCAGCTGCTGGGGGCCGTGGCCGGG 300
************************************************************
genoma GCCGCCATCCTCCATGAGATTACCCCTGTAGAAATCCGCGGGGACCTGGCTGTCAATGCT 720
cDNA GCGGCCATCCTCCATGAGATTACCCCTGTAGAAATCCGCGGGGACCTGGCTGTCAATGCT 360
** *********************************************************
genoma GTGAGTAGCTCTCTCCAGCTCCACAACAATGCAACAGCCGGCCAGGCGGTGACTGTGGAG 780
cDNA ------------------CTCCACAACAATGCAACAGCCGGCCAGGCGGTGACTGTGGAG 402
******************************************
genoma CTCTTCCTGACCATGCAGCTGGTGCTGTGCATCTTTGCCTCCACTGATGAGCGCCGCAGT 840
cDNA CTCTTCCTGACCATGCAGCTGGTGCTGTGCATCTTTGCCTCCACCGATGAGCGCCGCAGT 462
******************************************** ***************
genoma GACAACCTGGGTAGCCCTGCTCTCTCCATTGGTTTCTCTGTTACCCTGGGCCACCTCCTT 900
cDNA GACAACCTGGGTAGCCCTGCTCTCTCCATTGGTTTCTCTGTTACCCTGGGCCACCTCCTT 522
************************************************************
genoma GGGGTAAGTAAGCCACTACAGATCTATTTCACCGGCTGCTCCATGAATCCAGCCCGCTCC 960
cDNA GGG------------------ATCTATTTCACCGGCTGCTCCATGAATCCAGCCCGTTCC 564
*** *********************************** ***
genoma CTGGCTCCAGCAGTTGTCACTGGCAAGTTTGATGATCACTGGGTAATGGCCCTTCCCCAG 1020
cDNA CTGGCTCCAGCAGTTGTCACTGGCAAGTTTGATGATCACTGGGT---------------- 608
********************************************
genoma GTCTTCTGGATCGGACCCCTGGTGGGCGCCGTCATCGGTTCCCTCCTCTACAACTACCTG 1080
cDNA --CTTCTGGATCGGACCCCTGGTGGGCGCCATCATCGGTTCCCTCCTCTACAACTACCTG 666
**************************** *****************************
genoma CTGTTCCCCTCGACCAAGAGCCTGCAGGAGCGCCTGGCGGTGCTCAAGGGCCTGGAGCCG 1140
cDNA CTGTTCCCCTCGACCAAGAGCCTGCAGGAGCGCCTGGCGGTGCTCAAGGGCCTGGAGCCG 726
************************************************************
genoma GACACTGACTGGGAGGAACGCGAAGTGCGGCGGCGGCAGTCGGTGGAGCTGCACTCTCCG 1200
cDNA GACACTGACTGGGAGGAACGCGAAGTGCGGCGGCGGCAGTCGGTGGAGCTGCACTCTCCG 786
************************************************************
genoma CAGAGCCTGCCGCGCGGCAGCAAGGCCTGAGCGCCCCTTGCAGGGAACCAGACACTTGGG 1260
cDNA CAGAGCCTGCCGCGCGGCAGCAAGGCTTGA------------------------------ 816
************************** ***
genoma GATCGTGGCAGGGGGAGACGGAGAGCTCTGGAGAGCCCGCTCTGGTGCCTAGGGAGAGGT 1320
cDNA ------------------------------------------------------------
genoma GCATAGAGACCACCCTGGAGAGGGGGGTCTGTGGTTAGTGCATCTAATTTTATTAGGGTG 1380
cDNA ------------------------------------------------------------
genoma TAAAAGTGCTCGTCCATCTCTGCGTGTTTCTTTCCTCACGTGCAGAGACTGCATGTTCCT 1440
cDNA ------------------------------------------------------------
genoma GAGGGTGACCCCGAGTGCCCGTGGTGATACGGGGCGGGGGACTTTCATTCTTGCTTTGGC 1500
cDNA ------------------------------------------------------------
genoma CTTCCCCTCCTGTACCTGCAATAAATCCACTT 1532
cDNA --------------------------------